PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_010881
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 1150aa    MW: 129640 Da    PI: 7.9752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_010881genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08269289526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  lCr+f+  G C++Gd+C+F H+
  DCAR_010881 269 LCRDFSV-GMCRRGDQCRFLHD 289
                  9******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.845264291IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5265290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5266289IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-5268289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-6268290IPR000571Zinc finger, CCCH-type
SMARTSM003560.57353378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.718353379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1150 aa     Download sequence    Send to blast
MSGRKRKSLW DSKEETENSV EFGKHDARHG REIHSSHHAK WSDVEAKNAS NSNNGSRWSS  60
SEIWQDNNGR KDYNEMPKTE RAGDGDKSYS RSPGLTGRGK HNHSPPSEIY WSQSHRYQRS  120
RSSSRSKGRA GSRSRSRSRG RDREMDKDTE GIQSWSSGRD RGMDKDTHDI RSWSRGRDRD  180
MDKDTEYIQS RGRDRDMDRD TNDTRSWSRG RDRDMDRDID GIRSWGRGRD RDVDKDRDTN  240
WSRSTLSDHR REYNGMGDRK SVVRASSQLC RDFSVGMCRR GDQCRFLHDD NLNLSHEKLE  300
RERAEFRGRH ETNEAFSADN GRPRYRTLDK VSNYDRSNRS SSFDHDHRRQ PYKNVNIPCK  360
YFAMGRCHRD DCRFSHDHPG GGAVKEKLQY DRYDQHADDE NTYWNGPKWG DAHGVSDMNN  420
NDRNNLDTRK TNYVDRTAKK QASGILDQDW KDEKITWDGP TWEHVTSVSD VARPNQWVDS  480
NAGGVSFPEP PVARTKTDER CGNSMDLWNR TQNGSNTKNV DTVESTHVAT FDGGVWVDAQ  540
GSHVQTAGGS SLQTCEKVIE GASTQQLINN VGHPLVSENS YVQQSDGMRG NNIMPNDNSN  600
AVKGVNISGN TRQFLLPEQI LNHNSGSSIS MPSNINEADQ RNVIPVSPVD GHEADPNRSD  660
KQLLYPNQQD ESKNFFKDCT NKQQVFESEV CQVDPSLPQN DMTNYQVAAI TNLSASLNEI  720
FSNGKQLPEL YAVLNPKSST DLLTSLSCSA SVNSSVAATI GQPNQTTMFQ GQHVPIGAIE  780
LGKHDRTDVS DEQRNHGTDS KHCEEKPAPF ENTRSSTDRI TEGANNNKIY ELGEPKPLDQ  840
FLLPSINGPD PGKIEKIGST EKAFSPTEKL LKPDINIAAH QNVSVKSESC KPEEGIPFDN  900
ANPEGRVREG NSGKDEKEMR LFKVALVEYV KEILKPVWKE GQMSREVHKS IVKKVVDKVT  960
GTIQGGHIPK TQEKVDQYLA CSKPKLTKLV QMPSINGPDP GKIEKIGSTE KAFSPTEKLL  1020
KPDINIAAHQ NVSVKSESCK PEEGIPFDNA NPEGRVREGN SGKDEKEMRL FKVALVEYVK  1080
EILKPVWKEG QMSREVHKSI VKKVVDKVTG TIQGGHIPKT QEKVDQYLAC SKPKLTKLVQ  1140
AYTERLLKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RSRSRSRGR
2132142RSRSRSRGRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-19C3H family protein